Suppl. Table 4 .xls - Functional Genomics

Genes induced under drought in both Andean potato clones, SA2563 and Sullu

				SA2563		Sullu
Probe	Gene name	StGI TC	Function	d23	d 42	d 23	d 42
			CELL GROWTH, CELL DIVISION AND DNA SYNTHESIS
STMGM76	Extensin protein-like	TC118596	cell elongation	ns	2.3	ns	2.4
STMIF12	Periaxin-like protein	TC132202	extensin domains	ns	2.5	3.9	ns
STMGR75 STMDP13	Origin recognition complex subunit 1-like protein	TC128634 TC120839	DNA replication	ns	2.2	ns	2.9
			TRANSCRIPTION
			DNA-binding
STMCH76	DNA-binding protein DF1	TC113629 TC127716	DNA-binding	2.8	2.1	2.2	ns
			Transcription Factor
STMEU37	CaCBF1B (DREB-like)	TC116037	transcription factor	7.6	ns	6.8	ns
STMDJ76	DNA-binding protein 3	TC120484	transcription factor	4.6	ns	4.4	ns
STMHA63 STMEF49 STMEG07 STMET20	DNA-binding protein 4	TC112852 TC112853	transcription factor	6.5	3.6	3.5	ns
STMHQ55 STMID35	G-box-binding protein TAF-3	TC114402	transcription factor	4.5	6.5	2.3	4.4
STMIZ28	Homeobox-leucine zipper protein HAT22	TC127382	transcription factor	2.2	2.5	ns	3.0
STMCM32	Homeodomain leucine zipper protein HDZ2	TC121639 TC129714	transcription factor	2.8	6.3	ns	4.0
STMIK23	Homeodomain leucine zipper protein HDZ2	TC129714	transcription factor	2.6	5.3	ns	3.8
STMHT30	Homeotic protein Athb-7	TC113966	transcription factor	9.5	22.9	ns	9.5
STMGG58	I-box binding factor	TC115595	transcription factor	2.2	3.6	ns	3.6
STMIY82	Jasmonic acid 2	TC120089 TC120090	transcription factor	3.5	7.0	3.5	3.4
STMHF70	Transcription factor Myb1	TC112028 TC112033 TC112033	transcription factor	ns	2.8	ns	2.9
STMJD19	RD 26, similar to NAM family protein	TC128464	transcription factor	3.6	6.4	4.6	5.9
STMIW03	WIZZ	TC130471	transcription factor	6.7	ns	20.7	ns
STMEP07	WIZZ	TC121628	transcription factor	ns	2.4	6.8	ns
STMHY53	WRKY3	TC113340	transcription factor	2.9	3.0	6.0	ns
STMIU36 STMIZ09	WRKY1	TC128904	transcription factor	2.7	ns	2.6	ns
STMJC11	WRKY-type transcription factor	TC118798	transcription factor	4.0	ns	2.5	ns
STMDT03	SCARECROW transcriptional regulator-like protein	TC120067	transcription factor	4.0	2.5	8.9	ns
STMDH07	Putative CCAAT-binding transcription factor	TC120344 TC120345 TC128542	transcription factor	3.1	3.7	ns	2.0
STMHU70	Putative CCAAT-binding transcription factor	TC128542	transcription factor	7.1	ns	ns	2.5
STMGW72	Probable CCCH-type zinc finger protein	TC126625	transcription factor	ns	5.5	ns	2.9
STMHX38	Similar to basic helix-loop-helix family protein	TC115176	transcription factor	3.2	7.7	ns	3.8
STMCN79 STMFB71	SPF1 protein	TC126464	transcription factor	3.8	ns	5.5	ns
STMHE15	Transcription factor - fava bean	TC126883	transcription factor	2.5	2.5	ns	2.7
STMJB52	Transcription factor Pti4	TC120677	transcription factor	2.7	ns	5.6	ns
STMDH60	Tuber-specific and sucrose-responsive element binding factor	TC119970	transcription control	2.0	3.7	ns	3.2
			PROTEIN SYNTHESIS
			RNA-binding & processing
STMCV61 STMDS18	RNA helicase	TC112178	RNA-binding	ns	2.6	ns	2.0
STMGE78	RNA-binding glycine-rich protein-1	TC125914	RNA-binding	3.1	6.7	ns	8.4
			Ribosomal Proteins
STMIT31	60S ribosomal protein L18	TC123005	ribosomal protein	2.9	ns	4.8	ns
			Translation
STMEY59	Translation initiation factor-like protein	TC120168	translation	2.2	2.8	3.1	ns
			CELL COMMUNICATION AND SIGNALING
STMES89	Calcium related protein	TC130469	Ca-binding	2.6	ns	6.4	ns
STMIN72	Calmodulin-like protein	TC117168	Ca-binding	2.5	3.1	4.6	ns
STMER65	Calmodulin-like protein	TC128019	putative Ca-binding	2.7	ns	2.2	ns
STMHL92 STMHU62 STMHP72	Similar to IQ domain-containing protein	TC119109 TC19110	calmodulin binding	ns	8.5	ns	7.6
			Signaling
STMEF62 STMJL27	SCARECROW phytochrome A signal transduction	TC128201	phytochrome A signaling	2.6	2.0	5.2	ns
			GTP/ATP-binding
STMIV50	Extra-large G-protein-like	TC115948	GTP-binding	2.9	ns	3.2	ns
STMIZ21	Expressed protein	TC115383	GTP-binding	ns	3.0	2.2	ns
			Kinases and Phosphatases
STMIL26	Probable serine/threonine-specific protein kinase	TC127763	putative kinase	3.6	2.9	ns	2.1
STMGX18	CBL interacting protein kinase 4	TC112635	kinase	2.6	3.2	ns	2.6
STMJC86	Protein kinase homolog	TC115960	putative kinase	2.4	2.4	3.0	ns
STMCR96	Serine/threonine kinase SNFL1	TC117710	kinase	2.4	ns	2.4	ns
STMGQ87	MAPK 3	TC120898 TC120899	kinase	2.1	ns	3.4	ns
STMDC87	Osmotic stress-activated protein kinase	TC121412	kinase	ns	3.2	ns	3.0
STMHO79 STMHS17	Protein phosphatase 2C	TC119843	phosphatase	8.0	11.8	ns	10.3
STMGN10	Probable protein phosphatase 2C	TC114133 TC114134	phosphatase	5.1	5.6	ns	6.9
STMCY12	Similar to protein phosphatase 2C-related	TC119910	phosphatase	3.7	3.7	ns	2.8
STMJB25	Similar to plant acid phosphatase/mechanosensitive ion channel domain-containing protein	TC129875 TC131320	phosphatase	4.6	ns	4.5	ns
STMGM24	Similar to protein phosphatase 2C family protein	TC116723 TC131824	putative phosphatase	4.4	ns	6.7	ns
STMGP26	Avr9/Cf-9 rapidly elicited protein 284	TC131877	putative phosphatase	12.7	ns	7.9	ns
STMIQ20	Similar to protein-tyrosine phosphatase 3	TC123816	phosphatase	2.1	ns	4.1	ns
			HORMONE
STMIO05	Weakly similar to GRAM domain-containing protein / ABA-responsive protein	TC122632	response to ABA	2.1	ns	10.0	ns
			PHOTOSYNTHESIS, ELECTRON TRANSPORT, ENERGY
STMIC42 STMIX48 STMJO47	Early light-inducible protein precursor	TC112878	chlorophyll-binding	ns	2.1	3.9	ns
STMIP26	Alternative oxidase 1b	TC128935	electron transport active oxygen scavanging	5.1	3.5	11.4	ns
			PROTEIN DESTINATION AND TURN-OVER
STMHU46	Similar to leucine-rich repeat family protein	TC113314	protein binding	3.4	ns	ns	6.6
STMJC63	Nuclear localization signal binding protein	TC122347	protein destination	15.4	15.6	ns	6.2
STMHO95	O-linked N-acetyl glucosamine transferase	TC113570	O-glycosylation	2.5	2.8	ns	2.1
STMEP09 STMIA47	F-box family protein	TC112748	ubiquitin cycle	2.8	3.9	2.6	ns
STMJD82	Ubiquitin extension protein	TC111853	ubiquitin cycle	ns	2.4	2.4	2.5
			METABOLISM
			Carbohydrate Metabolism
STMGU01	Similar to beta-amylase	TC118938 TC118938 TC118991	starch metabolism	2.4	2.6	ns	2.1
STMHA65	Beta-amylase	TC126648	starch metabolism	4.2	3.5	ns	2.7
STMGD25	Neutral invertase	TC118858 TC124949	sugar metabolism	5.5	5.8	ns	2.9
STMGN62	Neutral invertase	TC118858	sugar metabolism	5.2	6.9	ns	2.7
			Sugar Interconversion
STMCN30 STMIQ46	UDP-glucose 4-epimerase	TC128003	glucose galactose interconversion	5.2	6.0	ns	4.1
			Citrat Cycle, Glycolysis
STMDG22	Pyruvate kinase isozyme A	TC126332	glycolysis	2.1	2.6	ns	2.0
			Amino Acid Metabolism
STMHV15	Delta-1-pyrroline-5-carboxylate dehydrogenase	TC126656	proline biosynthesis	3.5	5.5	ns	3.1
STMGU82	Delta 1-pyrroline-5-carboxylate synthetase	TC128842	proline biosynthesis	9.9	11.6	ns	5.9
STMCP25	CIG1, proline oxidase	TC127497 TC127497	proline catabolism	2.0	ns	5.5	ns
STMJA37	Histidine decarboxylase	TC120565	histidine metabolism	3.0	ns	4.3	ns
STMEP88	Histidine decarboxylase	TC120566	histidine metabolism	2.8	ns	5.4	ns
STMHT08	3-methyl-2-oxobutanoate dehydrogenase	TC115779 TC124955	valine, leucine, isoleucine metabolism	3.2	8.7	ns	2.8
			Lipid Metabolism
STMDT79	Wax synthase isoform 3	TC114713	lipid metabolism	2.7	2.9	ns	2.4
STMCV45	Fatty acid elongase-like protein (cer2-like)	TC114172	lipid metabolism	ns	2.8	ns	2.2
STMIT77	GDSL-motif lipase/hydrolase-like protein	TC123586	lipid metabolism	ns	2.4	ns	10.3
STMGV44	Lipase homolog	TC129627	lipid metabolism	2.2	ns	ns	2.1
STMEU40	Esterase/lipase/thioesterase family protein	TC123911	lipid metabolism	2.5	4.3	2.4	ns
STMGR44	Lipid transfer protein 1	TC126089	lipid transfer	8.9	15.1	ns	4.6
STMGN69	Lipid transfer protein 1	TC126632	lipid transfer	5.4	11.8	ns	8.2
STMGQ20	Lipid transfer protein 2	TC126090	lipid transfer	7.2	10.9	ns	3.2
STMCS65	Lipid transfer protein 2	TC126088	lipid transfer	ns	2.7	2.7	3.3
			Metabolism of Vitamins and Cofactors
STMII80	Thiamine-phosphate pyrophosphorylase	TC116260	thiamine metabolism	2.9	3.4	2.9	ns
STMII15 STMCQ94	S-adenosylmethionine synthetase 1	TC118975	methyl and propylamino donor	2.0	2.2	ns	2.3
			Secondary (Aromatic) Metabolism
STMCL31	S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase	TC113859 TC113860	secondary metabolism	3.7	5.2	2.2	3.7
STMIY78	4-coumarate-CoA ligase-like protein	TC119296	phenylpropanoid metabolism	2.2	ns	2.4	ns
STMJE63	N-hydroxycinnamoyl-CoA:tyramine N-hydroxycinnamoyl transferase THT7-8	TC112913 TC112915	phenylpropanoid metabolism	2.1	ns	2.7	ns
STMEZ84	N-hydroxycinnamoyl-CoA:tyramine N-hydroxycinnamoyl transferase THT7-9	TC112914	phenylpropanoid metabolism	2.3	ns	3.9	ns
STMHT83 STMIX43	Cinnamoyl-CoA reductase-like protein	TC127955	lignin biosynthesis	4.7	6.9	4.3	ns
STMFB08	4-coumarate-CoA ligase-like protein	TC120149	lignin synthesis	ns	2.4	2.8	ns
STMGP67	Putative muconate cycloisomerase-like protein	TC119787	polyphenol metabolism	2.5	3.3	ns	2.9
			Other Metabolical Activities
STMIZ85	Monooxygenase 1	TC127597	monooxygenase	3.6	ns	6.1	ns
STMCV02	Epoxidase	TC118413	epoxidase activity	5.3	3.6	ns	2.2
			TRANSPORT
STMDD63	Ca2+/H+-exchanging protein - mung bean {Vigna radiata;}	TC112494 TC121283	kation transport	2.2	3.4	2.3	ns
STMIQ28	CLC-Nt2 protein	TC128993	chloride transport	ns	2.1	ns	6.3
STMJG07 STMEW02	Syntaxin-related protein Nt-syr1	TC122378	intracellular transport	2.6	3.1	7.1	ns
STMHA35	Similar to mitochondrial substrate carrier family	TC112177	mitochondrial transport	3.8	ns	3.4	ns
STMGF07	Proton-dependent oligopeptide transport (POT) family protein	TC123895	oligiopeptide transport	2.3	ns	5.7	ns
STMHV73	PDR11 ABC transporter	TC113393	transport	5.8	3.7	3.4	2.3
STMGR63	Glutamate/malate translocator	TC119834	transport, energy	8.2	4.2	ns	2.0
STMIK25	Microtubule associated protein	TC128489	transport	2.5	2.3	2.1	ns
			CELL WALL
STMHV17 STMGU64	Similar to xyloglucan endo-1,4-beta-D-glucanase precursor	TC128599 TC125027	cell wall	4.2	5.3	ns	3.6
			CELL RESCUE, PATHOGEN DEFENCE AND AGING
STMHQ43	Similar to universal stress protein	TC120304	response to stress	ns	2.3	2.8	ns
			Response to Oxidative Stress
STMEC68	Aldehyde dehydrogenase family 7 member	TC119606	aldehyd metabolism	3.4	3.6	ns	2.3
			Abiotic Stress
STMHK44	Chloroplast small heat shock protein class I	TC113156 T	response to heat stress	4.7	5.3	2.5	ns
STMHR92	70kD heat shock protein	TC125185	response to heat stress	2.3	2.7	3.8	ns
STMGD72	Class II small heat shock protein Le-HSP17.6	TC119946 TC119947	response to heat, response to osmotic stress	9.9	8.2	ns	2.6
STMEW74	Ci21A protein	TC125994	response to cold stress	4.0	3.2	2.5	2.8
STMHZ25	Ci21B protein	TC128226	response to cold stress	3.0	2.7	ns	3.2
STMHQ27	Dehydrin TAS14	TC119280	response to water stress	5.7	6.5	ns	5.1
STMJG89	LEA 5	TC112718	response to water stress	2.8	5.8	7.7	ns
STMIH22 STMIW26	LEA5	TC112721	response to water stress	2.5	4.3	8.6	ns
STMDW52	LEA5	TC112720	response to water stress	2.8	4.9	7.5	ns
STMIM43	LEA homolog (tomato)	TC112719	response to water stress	3.3	6.0	8.2	ns
STMJO88	LEA-18	TC117167	response to water stress	2.9	2.5	2.0	ns
STMGA34	LEA-like protein ER5	TC121446	response to water stress	3.1	4.3	14.6	5.0
STMGU74	Drought-responsive protein / drought-induced protein (Di21), LEA domain	TC122011	response to water stress	2.6	2.7	4.8	2.4
STMID37	Similar to ERD4 protein	TC121675	response to water stress	3.5	2.7	3.6	2.6
			Senescence
STMHV25	Similar to senescence-associated protein-like	TC112690	senescence	4.0	3.3	3.0	ns
			Pathogen Defense
STMIT83	Avr9/Cf-9 rapidly elicited protein 180	TC115776	pathogen defence	2.3	ns	13.7	ns
STMIC26	Disease resistance protein homolog F18B3.230	TC116660	pathogen defence	2.3	ns	6.9	ns
STMHY36	Putative resistance protein, weakly similar to nematode resistance-like protein	TC132420	pathogen defence	3.4	ns	2.5	ns
			UNCLASSIFIED
STMDP07	AT3g29575/MWE13_2	TC122137	unknown	3.6	2.7	2.0	2.8
STMGT63	Putative RING zinc finger protein-like protein	TC128001	unknown	2.0	3.3	2.2	2.7
STMIB78	Expressed protein	TC116496	unknown	3.3	ns	12.2	ns
STMEW07	Expressed protein	TC128521	unknown	3.0	ns	10.0	ns
STMEU57	Expressed protein	TC119865	unknown	2.8	ns	8.2	ns
STMES53	expressed protein	TC127349	unknown	3.3	ns	6.3	ns
STMIV62	GMFP5	TC112193	unknown	2.9	ns	6.1	ns
STMJP67	expressed protein	TC114458	unknown	2.5	ns	5.9	ns
STMHG16	Fiber protein 1	TC120692	unknown	2.1	ns	4.6	ns
STMDP77	Tus (Ter binding protein)	TC123933	unknown	4.4	ns	4.5	ns
STMEZ75	Putative membrane protein	TC125829	unknown	2.1	ns	4.2	ns
STMHX41	Leucine-rich repeat family protein	TC130398	unknown	4.9	ns	4.2	ns
STMEZ92	expressed protein	TC123507	unknown	2.0	ns	4.0	ns
STMIR73	AT3g29240/MXO21_9	TC112776	unknown	2.9	ns	3.9	ns
STMEW71	Similar to heavy-metal-associated domain	TC116103	unknown	2.3	ns	3.6	ns
STMHF03	F5O11.17	TC119398	unknown	2.9	ns	3.3	ns
STMEZ82	NAM (no apical meristem)-like protein	TC116997	unknown	2.3	ns	3.1	ns
STMIJ73	Expressed protein	TC121899	unknown	3.0	ns	2.4	ns
STMJO83	Weakly similar to Tol membrane spanning protein	TC123268	unknown	2.2	ns	2.3	ns
STMGX14	Expressed protein	TC126198 TC126199	unknown	2.1	ns	2.3	ns
STMIA91	SPX domain containing protein	TC131026	unknown	ns	3.0	ns	5.1
STMJL39	Putative RING zinc finger protein-like protein, weakly similar to dehydration-induced protein RD22-like protein	TC120988	unknown	ns	2.9	ns	3.3
STMEW11	DS2 protein	TC119760	unknown	ns	3.6	ns	2.9
STMDZ09 STMEJ47	Similar to basic helix-loop-helix protein SPATULA	TC113473	unknown	ns	2.6	ns	2.3
STMIN11	Weakly similar to A-agglutinin attachment subunit precursor	TC118657	unknown	ns	2.1	ns	2.1
STMGQ17 STMGY28	Genomic DNA chromosome 3 P1 clone:MMM17	TC128247	unknown	ns	3.1	ns	2.1
STMEV66	Expressed protein	TC114694	unknown	ns	2.2	ns	2.1
STMIA81	Weakly similar to zinc finger (C3HC4-type RING finger) family	TC115512	unknown	ns	2.3	ns	2.1
STMDU63	AKIN gamma	TC126843	unknown	ns	2.8	ns	2.0
STMGO59	Expressed protein	TC123047	unknown	3.4	4.4	5.1	ns
STMIQ02	Expressed protein	TC128908	unknown	4.1	3.0	5.1	ns
STMEN93	expressed protein	TC113431 TC113432	unknown	2.3	2.0	4.4	ns
STMGS40	Probable RING-H2 zinc finger protein	TC119302	unknown	2.7	3.2	4.1	ns
STMIA79	zinc finger (C3HC4-type RING finger) family protein	TC121490	unknown	2.5	2.6	3.0	ns
STMEP37	At1g02120/T7I23_26	TC120372	unknown	2.7	2.8	3.0	ns
STMHZ63	Expressed protein	TC120977	unknown	2.2	4.9	2.7	ns
STMGA83 STMJM53	Expressed protein	TC122658	unknown	3.2	4.0	2.5	ns
STMCY59	Hypothetical protein	TC120086	unknown	2.7	3.1	2.4	ns
STMEL34 STMHE32	expressed protein	TC127455 TC127454	unknown	2.1	3.5	2.4	ns
STMIQ57	Similar to Wsv453	TC115035	unknown	3.7	4.3	2.3	ns
STMHP32	remorin family protein	TC126146	unknown	2.4	3.6	2.1	ns
STMGM73	Hypothetical protein B1027A11.138	TC124043	unknown	10.0	9.3	ns	9.8
STMHS26	Emb\|CAB62340.1	TC124852	unknown	4.4	10.6	ns	7.9
STMGT96	Expressed protein	TC122399	unknown	3.2	3.6	ns	5.0
STMIM42	Glycine-rich protein	TC115984	unknown	3.0	3.0	ns	4.1
STMGG17	M355	TC130418	unknown	2.3	3.1	ns	3.2
STMDI37	Expressed protein	TC115645	unknown	6.5	4.8	ns	3.0
STMGW86	Expressed protein	TC123724	unknown	4.3	5.3	ns	2.9
STMGO56	probable C3HC4 zinc finger protein	TC123640 TC125015	unknown	4.4	7.7	ns	2.7
STMEF70	Putative ankyrin protein	TC113945	unknown	6.4	11.3	ns	2.7
STMCU52	Similar to WD-40 repeat family	TC122287	unknown	5.9	4.1	ns	2.5
STMCB11 STMCB12	expressed protein	TC122239	unknown	3.1	3.6	ns	2.2
STMGJ21 STMDO28	PDI-like protein	TC125241 TC120332	unknown	6.2	6.1	ns	2.1
STMHF48	Weakly similar to transport inhibitor response 1	TC119832	unknown	5.0	2.7	ns	2.0
STMCX11	Expressed protein	TC114255	unknown	ns	3.1	2.6	6.7
STMCG81	Similar to transducin family protein / WD-40 repeat family protein	TC122048	unknown	ns	2.1	3.0	ns
STMJP63	MA3 protein	TC127832	unknown	ns	2.5	2.7	ns
STMHY63	F59D6.6 protein	TC128336	unknown	ns	2.0	2.1	ns
STMHR21	Weakly similar to SPX domain-containing protein	TC125190	unknown	3.9	ns	ns	6.3
STMHP83	expressed protein	TC122208	unknown	4.7	ns	ns	2.7
STMGG96	Expressed protein	TC122488	unknown	2.1	ns	ns	2.3
STMCG49	Expressed protein	TC112463	unknown	2.4	ns	ns	2.1
STMGA48	putative MtN19	TC114459	unknown	ns	5.8	ns	15.0