Suppl. Table 3 .xls - Functional Genomics

Genes induced and repressed in a time and clone specific manner under drought

				SA2563		Sullu
Probe	Gene name	StGI TC	Function	d23	d42	d23	d42
CELL GROWTH, CELL DIVISION AND DNA SYNTHESIS
STMEU55	Extensin-like protein	TC114033	cell elongation	ns	-6.0	2.1	ns
STMGB59	Expansin11	TC120818	cell elongation	ns	-3.0	-2.2	2.8
STMDH16	Alpha-expansin precursor	TC121884	cell elongation	-2.7	ns	-4.3	5.5
TRANSCRIPTION
			Chromatin Remodeling
STMGF62	Stress-inducible histone H1	TC119154	chromatin remodeling	2.5	ns	ns	-2.0
			Transcription Factor
STMIK39	Ethylene-responsive element binding factor	TC112188	transcription factor	4.0	ns	2.8	-2.7
STMGO23 STMHU61	Transcription factor CCAAT-binding	TC126872 TC126875 TC126873	transcription factor	-3.7	-3.5	2.5	ns
STMDQ49	Transcription factor CCAAT-binding	TC126873	transcription factor	-3.6	-3.8	2.5	ns
STMIZ05	Similar to transcription factor YABBY family protein	TC113712	transcription factor	ns	-4.9	2.3	ns
STMIY21 STMJK86	Similar to zinc finger (B-box type) family protein	TC114962	transcription control	2.3	2.1	-2.0	ns
CELL COMMUNICATION AND SIGNALING
			Signaling
STMGP51	Rac GTPase activating protein 2	TC125506	signaling	ns	-6.0	ns	2.1
			Kinases and Phosphatases
STMEK24	Putative protein kinase	TC128150	kinase	ns	ns	-2.3	2.1
HORMONE-RELATED
STMJO04 STMJO04	Gip1-like protein	TC113540	response to gibberellin	-6.1	ns	ns	5.3
STMDR52 STMDR52	Gip1-like protein	TC113541	response to gibberellin	-5.5	ns	ns	6.1
STMIT53	Auxin-response factor	TC119826	response to auxin	ns	-3.2	2.2	-5.9
PROTEIN DESTINATION AND TURN-OVER
STMJN87	Farnesyltransferase beta chain	TC128495	protein modification	-2.3	-3.4	2.0	ns
STMIP70	SBT4B protein	TC124128	protein degradation	-3.9	-3.0	ns	4.5
STMCM82	Similar to aspartyl protease family	TC119332	protein degradation	-3.6	-5.1	ns	7.8
STMCL26 STMCX33 STMCV60	Cysteine protease inhibitor 1 precursor (PCPI 8.3) (P340) (P34021). {Solanum tuberosum;}	TC111727	protein degradation	ns	-2.8	-8.0	3.0
STMHQ67	Cysteine protease inhibitor 1 precursor (PCPI 8.3) (P340) (P34021). {Solanum tuberosum;}	TC111708 TC111710 TC111750 TC111831 TC111924	protein degradation	ns	ns	-5.8	2.3
STMDB78	Cysteine protease inhibitor 4	TC112274	proteinase inhibitor	ns	ns	-2.4	18.0
STMCQ55	Aspartic protease inhibitor 10 precursor	TC111943 TC111946 TC112003	proteinase inhibitor	ns	-2.4	ns	3.2
METABOLISM
			Carbohydrate Metabolism
			Sugar Interconversion
STMET38	Similar to nucleotide sugar epimerase-like protein	TC112345	glucose galactose interconversion	-2.6	-4.9	2.1	ns
			Glucanases, Glycosyltransferases
STMIU93	Similar to glycosyl transferase family 20 protein / trehalose-phosphatase family protein	TC128467	glycosyltransferase	ns	-2.4	4.5	ns
			Nitrogen Metabolism
STMDM46	Glutamate synthase chloroplast precursor	TC119844	N-metabolism	ns	ns	-3.0	3.0
			Amino Acid Metabolism
STMEJ12	Asparagine synthetase	TC126200 TC126201	alanine and aspartate metabolism	ns	3.5	-3.4	12.0
STMCX38	L-asparaginase	TC119405	alanine and aspartate metabolism	ns	-5.2	2.1	ns
			Lipid Metabolism
STMHY52	Patatin class I precursor	TC112006	lipid metabolism	ns	ns	5.2	-13.4
STMGG43 STMHU29	Class I patatin	TC111997	lipid metabolism	ns	ns	2.7	-9.7
STMGD48 STMGN35	Patatin T5 precursor (Potato tuber protein). {Solanum tuberosum;}	TC112007 TC111994 TC112005 TC125981	lipid metabolism	ns	ns	4.3	-7.1
STMHL62	Patatin T5 precursor	TC125982 TC111999	lipid metabolism	ns	ns	3.6	-7.0
STMHA69	patatin precursor non-sucrose-inducible	TC112010 TC112013 TC111993	lipid metabolism	ns	ns	7.4	-16.2
STMGX77	Similar to GDSL-like lipase/acylhydrolase	TC122805	lipid metabolism	-2.3	-3.0	ns	2.3
STMIH07	Phospholipase A2	TC116136	phosphoglycerolipid metabolism	-2.1	ns	2.3	ns
STMDS80	Similar to phospholipase/carboxylesterase	TC122884	phosphoglycerolipid metabolism	-4.7	-8.0	3.7	-7.7
			Nucleotide Metabolism
STMGA89	Ribose-phosphate diphosphokinase	TC120795	purine metabolism	ns	ns	2.4	-2.7
			Metabolism of Vitamins and Cofactors
STMIQ93	Inositol-1(or 4)-monophosphatase 3	TC121318	inositol phosphate metabolism	ns	-2.3	2.2	ns
			Secondary (Aromatic) Metabolism
STMHP28	Chalcone synthase 2	TC117356 TC120450	flavanoid biosynthesis	ns	-5.3	10.6	ns
STMHO88	Flavonoid 3'-monooxygenase	TC112643 TC115343	flavanoid metabolism	ns	-3.9	2.9	ns
STMDB35	Flavanone 3 beta-hydroxylase	TC113679	flavanoid metabolism	ns	-2.6	4.4	ns
STMHT73	Flavonoid 3'-monooxygenase	TC112644	flavanoid metabolism	ns	-5.0	3.3	ns
STMEG89 STMGP48	Peroxidase	TC118916 TC118916	peroxidase	ns	ns	-2.7	6.0
STMJO36 STMEI69	Catechol O-methyltransferase III	TC112932	polyphenol metabolism	ns	-2.1	ns	2.0
			Other Metabolical Activities
STMCR07	Putative short-chain type alcohol dehydrogenase	TC113697	alcohol dehydrogenase	ns	ns	2.5	-2.7
TRANSPORT
STMIS86	Sodium sulfate or dicarboxylate transporter	TC127823	ion transport	2.8	2.2	-4.5	ns
STMER74	Ferric reductase	TC118743 TC127844	iron uptake	ns	2.4	ns	-2.1
STMES93	Ferric reductase	TC127844	iron uptake	ns	ns	2.7	-2.3
STMGR91	Nitrate transporter	TC116530 TC118367	N-transport	ns	ns	-2.2	2.2
STMEC08 STMEJ57	Glucose-6-phosphate/phosphate translocator 2	TC112240	sugar transport	-2.7	ns	2.3	-3.0
STMJB02	Probable aquaporin NIP5.1	TC113434	water channel	ns	-2.1	2.3	ns
STMJG48	ABC transporter	TC125355	transport	ns	-2.5	2.2	ns
CELL WALL
STMGQ22	Endo-beta-1 4-D-glucanase	TC113342	cellulose metabolism	ns	-4.7	-3.1	4.0
STMDF56	Probable arabinogalactan protein precursor	TC116556	cell wall	ns	-13.2	2.5	5.8
STMGW15	Similar to pectate lyase	TC127806 TC127807	cell wall	-7.5	-8.7	-3.2	3.5
STMHY50	Pectin methylesterase isoform alpha	TC125259	cell wall	ns	-2.1	2.7	ns
STMCC72 STMIJ58	Polygalacturonase	TC112773 TC115247	cell wall	-3.0	-5.5	ns	5.7
STMIH65	Probable polygalacturonase	TC129099	cell wall	ns	-12.7	ns	4.4
STMEP57	Xyloglucan endo-1 4-beta-D-glucanase	TC123630	cell wall	ns	-4.0	ns	3.6
STMJJ17	Xyloglucan endotransglucosylase-hydrolase	TC127417 TC127418	cell wall	ns	-9.0	8.9	-4.6
STMJB14	Xyloglucan endotransglucosylase-hydrolase	TC127417 TC127419	cell wall	ns	-3.3	8.0	-3.1
STMIG22	Syringolide-induced protein 19-1-5	TC127417	cell wall	ns	ns	11.8	-4.0
CELL RESCUE, PATHOGEN DEFENCE AND AGING
			Protein Stabilization
STMHW51	Copper chaperone	TC122155	copper chaperone, response to ROS	-2.2	ns	2.3	ns
STMHX44	Copper homeostasis factor	TC129293	copper chaperone, response to ROS	-2.5	-3.7	2.3	ns
STMGZ22 STMIY26	Similar to DnaJ protein	TC128206	protein folding	-2.4	-2.4	2.2	ns
			Response to Oxidative Stress
STMHG87	Superoxide dismutase	TC126481	response to oxidative stress	-4.0	ns	2.4	ns
			Abiotic Stress
STMEP32	Similar to early-responsive to dehydration	TC131831	response to water stress	ns	-3.4	2.0	ns
STMDS08	Dehydration-induced protein RD22-like protein	TC112054 TC112053	response to water stress	ns	4.0	-3.4	18.0
STMDS08 STMGT86 STMHJ26 STMDU35 STMGB30 STMCK80 STMGL87 STMHF49 STMDE64	Dehydration-induced protein RD22-like protein	TC112053 TC112055	response to water stress	ns	3.6	-2.8	14.2
STMGW11	BURP domain-containing protein	TC112057 TC112064	response to water stress	ns	3.8	-2.7	14.8
STMGM04	BURP domain-containing protein	TC112062	response to water stress	ns	3.3	-3.1	10.8
STMGV14	BURP domain-containing protein	TC112066 TC112058	response to water stress	ns	3.8	-3.2	15.2
STMGM85	BURP domain-containing protein	TC112059 TC112053	response to water stress	ns	3.9	-3.6	14.9
STMGL30	BURP domain-containing protein	TC112064 TC112058	response to water stress	ns	3.3	-3.0	14.8
			Senescence
STMJD77 STMIR01	Similar to SAG101	TC127665	senescence	ns	-2.1	2.9	ns
STMEW62 STMEW80 STMFB94	B12D protein	TC113491	senescence	ns	ns	2.1	-2.2
			Pathogen Defense
STMIX39	Homologue to chitin-binding lectin 1	TC111774 TC111911	pathogen defence	-2.1	-2.9	ns	2.7
STMJF08	Xyloglucanase inhibitor	TC120470	pathogen defence	-3.9	-2.9	4.4	ns
UNCLASSIFIED
STMET55	Similar to F-box family protein	TC120647	unknown	-2.4	-2.1	2.0	-3.7
STMIO29	At4g36570	TC123637	unknown	-5.0	-14.7	3.7	-4.5
STMIR53	GBR5	TC128710	unknown	-2.4	ns	2.5	ns
STMIH74	F4P13.22 protein	TC117266	unknown	ns	-7.4	ns	4.4
STMDP79	expressed protein low similarity to early flowering protein 1	TC113820	unknown	ns	-2.8	2.1	-2.5
STMIJ11	AT4g27700/T29A15_190	TC113918	unknown	-2.6	-2.2	2.5	ns
STMIT90	Expressed protein	TC122731	unknown	-4.9	-3.7	2.1	ns
STMCM84 STMIX96	Ultraviolet-B-repressible protein	TC126033	unknown	-2.4	-2.3	2.1	ns
STMIT58	Weakly similar to DC1 domain-containing protein	TC127401	unknown	2.0	3.9	-2.0	ns
STMEI26	AT3g60900/T4C21_310	TC126465	unknown	-3.9	-8.7	ns	4.1
STMCY06	Expressed protein	TC129996	unknown	ns	2.9	-2.8	9.8
STMFA15 STMJM79	Expressed protein	TC121148	unknown	2.5	ns	2.4	-2.4
STMJJ23	Putative ripening-related protein, weakly similar to 21 kDa protein precursor	TC114318	unknown	ns	-2.6	7.3	ns
STMDB95	Expressed protein	TC120924	unknown	ns	-2.6	2.7	ns
STMGQ88 STMCR42	Expressed protein	TC127024 TC127025 TC132234	unknown	ns	-3.5	2.5	ns
STMCR43 STMCS03	STS14 protein precursor	TC127579	unknown	ns	-2.8	2.4	ns
STMIL03	Expressed protein	TC115816	unknown	ns	-2.3	2.3	ns
STMIV46	Orf protein	TC122218	unknown	ns	-3.4	2.1	ns
STMJD48	GPI-anchored protein	TC121018	unknown	ns	-2.4	2.0	ns
STMJF28	Methyltransferase-related	TC120968	unknown	ns	ns	2.0	-2.0
STMGH31	Expressed protein	TC124140	unknown	ns	ns	2.7	-2.0
STMET08	Weakly similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	TC128896	unknown	ns	ns	2.3	-2.2
STMGA88	Expressed protein	TC114092	unknown	ns	ns	2.5	-2.2