Genes induced and repressed in a time and clone specific manner under drought | | |
| | | | | | | |
| | | | SA2563 | Sullu |
Probe | Gene name | StGI TC | Function | d23 | d42 | d23 | d42 |
CELL GROWTH, CELL DIVISION AND DNA SYNTHESIS | | | | | | | |
STMEU55 | Extensin-like protein | TC114033 | cell elongation | ns | -6.0 | 2.1 | ns |
STMGB59 | Expansin11 | TC120818 | cell elongation | ns | -3.0 | -2.2 | 2.8 |
STMDH16 | Alpha-expansin precursor | TC121884 | cell elongation | -2.7 | ns | -4.3 | 5.5 |
TRANSCRIPTION | | | | | | | |
| | | Chromatin Remodeling | | | | |
STMGF62 | Stress-inducible histone H1 | TC119154 | chromatin remodeling | 2.5 | ns | ns | -2.0 |
| | | Transcription Factor | | | | |
STMIK39 | Ethylene-responsive element binding factor | TC112188 | transcription factor | 4.0 | ns | 2.8 | -2.7 |
STMGO23 STMHU61 | Transcription factor CCAAT-binding | TC126872 TC126875 TC126873 | transcription factor | -3.7 | -3.5 | 2.5 | ns |
STMDQ49 | Transcription factor CCAAT-binding | TC126873 | transcription factor | -3.6 | -3.8 | 2.5 | ns |
STMIZ05 | Similar to transcription factor YABBY family protein | TC113712 | transcription factor | ns | -4.9 | 2.3 | ns |
STMIY21 STMJK86 | Similar to zinc finger (B-box type) family protein | TC114962 | transcription control | 2.3 | 2.1 | -2.0 | ns |
CELL COMMUNICATION AND SIGNALING | | | | | | | |
| | | Signaling | | | | |
STMGP51 | Rac GTPase activating protein 2 | TC125506 | signaling | ns | -6.0 | ns | 2.1 |
| | | Kinases and Phosphatases | | | | |
STMEK24 | Putative protein kinase | TC128150 | kinase | ns | ns | -2.3 | 2.1 |
HORMONE-RELATED | | | | | | | |
STMJO04 STMJO04 | Gip1-like protein | TC113540 | response to gibberellin | -6.1 | ns | ns | 5.3 |
STMDR52 STMDR52 | Gip1-like protein | TC113541 | response to gibberellin | -5.5 | ns | ns | 6.1 |
STMIT53 | Auxin-response factor | TC119826 | response to auxin | ns | -3.2 | 2.2 | -5.9 |
PROTEIN DESTINATION AND TURN-OVER | | | | | | | |
STMJN87 | Farnesyltransferase beta chain | TC128495 | protein modification | -2.3 | -3.4 | 2.0 | ns |
STMIP70 | SBT4B protein | TC124128 | protein degradation | -3.9 | -3.0 | ns | 4.5 |
STMCM82 | Similar to aspartyl protease family | TC119332 | protein degradation | -3.6 | -5.1 | ns | 7.8 |
STMCL26 STMCX33 STMCV60 | Cysteine protease inhibitor 1 precursor (PCPI 8.3) (P340) (P34021). {Solanum tuberosum;} | TC111727 | protein degradation | ns | -2.8 | -8.0 | 3.0 |
STMHQ67 | Cysteine protease inhibitor 1 precursor (PCPI 8.3) (P340) (P34021). {Solanum tuberosum;} | TC111708 TC111710 TC111750 TC111831 TC111924 | protein degradation | ns | ns | -5.8 | 2.3 |
STMDB78 | Cysteine protease inhibitor 4 | TC112274 | proteinase inhibitor | ns | ns | -2.4 | 18.0 |
STMCQ55 | Aspartic protease inhibitor 10 precursor | TC111943 TC111946 TC112003 | proteinase inhibitor | ns | -2.4 | ns | 3.2 |
METABOLISM | | | | | | | |
| | | Carbohydrate Metabolism | | | | |
| | | Sugar Interconversion | | | | |
STMET38 | Similar to nucleotide sugar epimerase-like protein | TC112345 | glucose galactose interconversion | -2.6 | -4.9 | 2.1 | ns |
| | | Glucanases, Glycosyltransferases | | | | |
STMIU93 | Similar to glycosyl transferase family 20 protein / trehalose-phosphatase family protein | TC128467 | glycosyltransferase | ns | -2.4 | 4.5 | ns |
| | | Nitrogen Metabolism | | | | |
STMDM46 | Glutamate synthase chloroplast precursor | TC119844 | N-metabolism | ns | ns | -3.0 | 3.0 |
| | | Amino Acid Metabolism | | | | |
STMEJ12 | Asparagine synthetase | TC126200 TC126201 | alanine and aspartate metabolism | ns | 3.5 | -3.4 | 12.0 |
STMCX38 | L-asparaginase | TC119405 | alanine and aspartate metabolism | ns | -5.2 | 2.1 | ns |
| | | Lipid Metabolism | | | | |
STMHY52 | Patatin class I precursor | TC112006 | lipid metabolism | ns | ns | 5.2 | -13.4 |
STMGG43 STMHU29 | Class I patatin | TC111997 | lipid metabolism | ns | ns | 2.7 | -9.7 |
STMGD48 STMGN35 | Patatin T5 precursor (Potato tuber protein). {Solanum tuberosum;} | TC112007 TC111994 TC112005 TC125981 | lipid metabolism | ns | ns | 4.3 | -7.1 |
STMHL62 | Patatin T5 precursor | TC125982 TC111999 | lipid metabolism | ns | ns | 3.6 | -7.0 |
STMHA69 | patatin precursor non-sucrose-inducible | TC112010 TC112013 TC111993 | lipid metabolism | ns | ns | 7.4 | -16.2 |
STMGX77 | Similar to GDSL-like lipase/acylhydrolase | TC122805 | lipid metabolism | -2.3 | -3.0 | ns | 2.3 |
STMIH07 | Phospholipase A2 | TC116136 | phosphoglycerolipid metabolism | -2.1 | ns | 2.3 | ns |
STMDS80 | Similar to phospholipase/carboxylesterase | TC122884 | phosphoglycerolipid metabolism | -4.7 | -8.0 | 3.7 | -7.7 |
| | | Nucleotide Metabolism | | | | |
STMGA89 | Ribose-phosphate diphosphokinase | TC120795 | purine metabolism | ns | ns | 2.4 | -2.7 |
| | | Metabolism of Vitamins and Cofactors | | | | |
STMIQ93 | Inositol-1(or 4)-monophosphatase 3 | TC121318 | inositol phosphate metabolism | ns | -2.3 | 2.2 | ns |
| | | Secondary (Aromatic) Metabolism | | | | |
STMHP28 | Chalcone synthase 2 | TC117356 TC120450 | flavanoid biosynthesis | ns | -5.3 | 10.6 | ns |
STMHO88 | Flavonoid 3'-monooxygenase | TC112643 TC115343 | flavanoid metabolism | ns | -3.9 | 2.9 | ns |
STMDB35 | Flavanone 3 beta-hydroxylase | TC113679 | flavanoid metabolism | ns | -2.6 | 4.4 | ns |
STMHT73 | Flavonoid 3'-monooxygenase | TC112644 | flavanoid metabolism | ns | -5.0 | 3.3 | ns |
STMEG89 STMGP48 | Peroxidase | TC118916 TC118916 | peroxidase | ns | ns | -2.7 | 6.0 |
STMJO36 STMEI69 | Catechol O-methyltransferase III | TC112932 | polyphenol metabolism | ns | -2.1 | ns | 2.0 |
| | | Other Metabolical Activities | | | | |
STMCR07 | Putative short-chain type alcohol dehydrogenase | TC113697 | alcohol dehydrogenase | ns | ns | 2.5 | -2.7 |
TRANSPORT | | | | | | | |
STMIS86 | Sodium sulfate or dicarboxylate transporter | TC127823 | ion transport | 2.8 | 2.2 | -4.5 | ns |
STMER74 | Ferric reductase | TC118743 TC127844 | iron uptake | ns | 2.4 | ns | -2.1 |
STMES93 | Ferric reductase | TC127844 | iron uptake | ns | ns | 2.7 | -2.3 |
STMGR91 | Nitrate transporter | TC116530 TC118367 | N-transport | ns | ns | -2.2 | 2.2 |
STMEC08 STMEJ57 | Glucose-6-phosphate/phosphate translocator 2 | TC112240 | sugar transport | -2.7 | ns | 2.3 | -3.0 |
STMJB02 | Probable aquaporin NIP5.1 | TC113434 | water channel | ns | -2.1 | 2.3 | ns |
STMJG48 | ABC transporter | TC125355 | transport | ns | -2.5 | 2.2 | ns |
CELL WALL | | | | | | | |
STMGQ22 | Endo-beta-1 4-D-glucanase | TC113342 | cellulose metabolism | ns | -4.7 | -3.1 | 4.0 |
STMDF56 | Probable arabinogalactan protein precursor | TC116556 | cell wall | ns | -13.2 | 2.5 | 5.8 |
STMGW15 | Similar to pectate lyase | TC127806 TC127807 | cell wall | -7.5 | -8.7 | -3.2 | 3.5 |
STMHY50 | Pectin methylesterase isoform alpha | TC125259 | cell wall | ns | -2.1 | 2.7 | ns |
STMCC72 STMIJ58 | Polygalacturonase | TC112773 TC115247 | cell wall | -3.0 | -5.5 | ns | 5.7 |
STMIH65 | Probable polygalacturonase | TC129099 | cell wall | ns | -12.7 | ns | 4.4 |
STMEP57 | Xyloglucan endo-1 4-beta-D-glucanase | TC123630 | cell wall | ns | -4.0 | ns | 3.6 |
STMJJ17 | Xyloglucan endotransglucosylase-hydrolase | TC127417 TC127418 | cell wall | ns | -9.0 | 8.9 | -4.6 |
STMJB14 | Xyloglucan endotransglucosylase-hydrolase | TC127417 TC127419 | cell wall | ns | -3.3 | 8.0 | -3.1 |
STMIG22 | Syringolide-induced protein 19-1-5 | TC127417 | cell wall | ns | ns | 11.8 | -4.0 |
CELL RESCUE, PATHOGEN DEFENCE AND AGING | | | | | | | |
| | | Protein Stabilization | | | | |
STMHW51 | Copper chaperone | TC122155 | copper chaperone, response to ROS | -2.2 | ns | 2.3 | ns |
STMHX44 | Copper homeostasis factor | TC129293 | copper chaperone, response to ROS | -2.5 | -3.7 | 2.3 | ns |
STMGZ22 STMIY26 | Similar to DnaJ protein | TC128206 | protein folding | -2.4 | -2.4 | 2.2 | ns |
| | | Response to Oxidative Stress | | | | |
STMHG87 | Superoxide dismutase | TC126481 | response to oxidative stress | -4.0 | ns | 2.4 | ns |
| | | Abiotic Stress | | | | |
STMEP32 | Similar to early-responsive to dehydration | TC131831 | response to water stress | ns | -3.4 | 2.0 | ns |
STMDS08 | Dehydration-induced protein RD22-like protein | TC112054 TC112053 | response to water stress | ns | 4.0 | -3.4 | 18.0 |
STMDS08 STMGT86 STMHJ26 STMDU35 STMGB30 STMCK80 STMGL87 STMHF49 STMDE64 | Dehydration-induced protein RD22-like protein | TC112053 TC112055 | response to water stress | ns | 3.6 | -2.8 | 14.2 |
STMGW11 | BURP domain-containing protein | TC112057 TC112064 | response to water stress | ns | 3.8 | -2.7 | 14.8 |
STMGM04 | BURP domain-containing protein | TC112062 | response to water stress | ns | 3.3 | -3.1 | 10.8 |
STMGV14 | BURP domain-containing protein | TC112066 TC112058 | response to water stress | ns | 3.8 | -3.2 | 15.2 |
STMGM85 | BURP domain-containing protein | TC112059 TC112053 | response to water stress | ns | 3.9 | -3.6 | 14.9 |
STMGL30 | BURP domain-containing protein | TC112064 TC112058 | response to water stress | ns | 3.3 | -3.0 | 14.8 |
| | | Senescence | | | | |
STMJD77 STMIR01 | Similar to SAG101 | TC127665 | senescence | ns | -2.1 | 2.9 | ns |
STMEW62 STMEW80 STMFB94 | B12D protein | TC113491 | senescence | ns | ns | 2.1 | -2.2 |
| | | Pathogen Defense | | | | |
STMIX39 | Homologue to chitin-binding lectin 1 | TC111774 TC111911 | pathogen defence | -2.1 | -2.9 | ns | 2.7 |
STMJF08 | Xyloglucanase inhibitor | TC120470 | pathogen defence | -3.9 | -2.9 | 4.4 | ns |
UNCLASSIFIED | | | | | | | |
STMET55 | Similar to F-box family protein | TC120647 | unknown | -2.4 | -2.1 | 2.0 | -3.7 |
STMIO29 | At4g36570 | TC123637 | unknown | -5.0 | -14.7 | 3.7 | -4.5 |
STMIR53 | GBR5 | TC128710 | unknown | -2.4 | ns | 2.5 | ns |
STMIH74 | F4P13.22 protein | TC117266 | unknown | ns | -7.4 | ns | 4.4 |
STMDP79 | expressed protein low similarity to early flowering protein 1 | TC113820 | unknown | ns | -2.8 | 2.1 | -2.5 |
STMIJ11 | AT4g27700/T29A15_190 | TC113918 | unknown | -2.6 | -2.2 | 2.5 | ns |
STMIT90 | Expressed protein | TC122731 | unknown | -4.9 | -3.7 | 2.1 | ns |
STMCM84 STMIX96 | Ultraviolet-B-repressible protein | TC126033 | unknown | -2.4 | -2.3 | 2.1 | ns |
STMIT58 | Weakly similar to DC1 domain-containing protein | TC127401 | unknown | 2.0 | 3.9 | -2.0 | ns |
STMEI26 | AT3g60900/T4C21_310 | TC126465 | unknown | -3.9 | -8.7 | ns | 4.1 |
STMCY06 | Expressed protein | TC129996 | unknown | ns | 2.9 | -2.8 | 9.8 |
STMFA15 STMJM79 | Expressed protein | TC121148 | unknown | 2.5 | ns | 2.4 | -2.4 |
STMJJ23 | Putative ripening-related protein, weakly similar to 21 kDa protein precursor | TC114318 | unknown | ns | -2.6 | 7.3 | ns |
STMDB95 | Expressed protein | TC120924 | unknown | ns | -2.6 | 2.7 | ns |
STMGQ88 STMCR42 | Expressed protein | TC127024 TC127025 TC132234 | unknown | ns | -3.5 | 2.5 | ns |
STMCR43 STMCS03 | STS14 protein precursor | TC127579 | unknown | ns | -2.8 | 2.4 | ns |
STMIL03 | Expressed protein | TC115816 | unknown | ns | -2.3 | 2.3 | ns |
STMIV46 | Orf protein | TC122218 | unknown | ns | -3.4 | 2.1 | ns |
STMJD48 | GPI-anchored protein | TC121018 | unknown | ns | -2.4 | 2.0 | ns |
STMJF28 | Methyltransferase-related | TC120968 | unknown | ns | ns | 2.0 | -2.0 |
STMGH31 | Expressed protein | TC124140 | unknown | ns | ns | 2.7 | -2.0 |
STMET08 | Weakly similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein | TC128896 | unknown | ns | ns | 2.3 | -2.2 |
STMGA88 | Expressed protein | TC114092 | unknown | ns | ns | 2.5 | -2.2 |