Visitors of Integrating genomics assisted breeding (CCLF)


Home

Integrating genomics assisted breeding and novel selection methods for enhancing application and uptake of potato technologies in South Asia, CCLF Project No 320805



  Name Size Creator Creation Date Labels Comment  
PDF File CIDA Final Report (002).pdf 687 kB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
CIDA Final Report May 2016
File GS_Models_LB-BGLR package.R 4 kB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
R script to run GS in BGLR package for data on late blight resistance of 167 clones
File Gapit_lb_PanelKQ .R 2 kB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
R script to run GWAS in GAPIT with data on late blight resistance of 167 clones
Text File Chromosome_Location.txt 120 kB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
Chromosome position of 4738 SNP genotyped in 167 clones . Use this for GWAS in GAPIT package
Text File G3_Panel.txt 342 kB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
Kinship relationship matrix between 167 clones. Use this for GWAS and GS
Text File Qmatrix_Panel.txt 3 kB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
Membership of 167 clones to subpopulations. Use this for GWAS only
Text File LB_TRAIT.txt 3 kB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
Phenotypic data for LB resistance of 167 clones . Use this for practicing GWAS and GS
Text File X-4738_SNP.txt 2.20 MB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
Genotypic matrix of 167 genotypes evaluated for late blight. Use this to pracrtice GWAS and GS
Microsoft Excel Sheet Chromosome Positions 4738 SolCAP SN… 120 kB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
Chromosome Positions of 4738 SolCAP SNP genotyped in 171 breeding lines
Microsoft Word Document Thesis_Identification of Chrs.Regio… 2.36 MB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
Master Degree Thesis Research _ Maria Caraza _ Dalhousie University
Microsoft Excel Spreadsheet TS progenies from selected early bu… 22 kB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
True seed amount of crosses performed with top selected parents for adaptation to warm long day-length conditions
Microsoft Excel Spreadsheet Top 30 clones selected for their ea… 13 kB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
Clones selected for early tuberization and bulking under warm long day-length conditions
PDF File BGLR-extdoc.pdf 411 kB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
User's Manual for GS
PDF File gapit_help_document.pdf 1.76 MB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
User's Manual for GWAS
Microsoft Excel Spreadsheet SNP-based kinship relationship matr… 423 kB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
171 x 171 G3 kinship relationship matrix
Microsoft Excel Spreadsheet Membership_Population.xlsx 12 kB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
Membership of genotypes to subpopulations according to Structure Analysis
Microsoft Excel Spreadsheet Table S1 Adjusted mean values for t… 9.90 MB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
Phenotypic data, Long, and shortday length tuberization traits and late blight suscpetibility level
Microsoft Excel Spreadsheet Table S2. Matrix of Genotypic Data.… 7.12 MB Mihovilovich, Elisa (CIP) May 24, 2016
  • None
171 genotypes_4,738 SolCAP SNP
Labels
  • None